Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | U | W A append() (reacnetgenerator.utils.WriteBuffer method) appendIfNotNone() (in module reacnetgenerator.utils) B bytestolist() (in module reacnetgenerator.utils) C calculate_rate() (in module reacnetgenerator.tools) check() (reacnetgenerator.utils.WriteBuffer method) check_zero_signal() (in module reacnetgenerator.utils_np) checksha256() (in module reacnetgenerator.utils) compress() (in module reacnetgenerator.utils) D decompress() (in module reacnetgenerator.utils) DETECT (reacnetgenerator.ReacNetGenerator.Status attribute) DOWNLOAD (reacnetgenerator.ReacNetGenerator.Status attribute) download_file() (in module reacnetgenerator.utils) download_multifiles() (in module reacnetgenerator.utils) dps() (in module reacnetgenerator.dps) dps_reaction() (in module reacnetgenerator.dps) draw() (reacnetgenerator.ReacNetGenerator method) E enable_viewboxing (reacnetgenerator.utils.SCOUROPTIONS attribute) extend() (reacnetgenerator.utils.WriteBuffer method) F flush() (reacnetgenerator.utils.WriteBuffer method) G gather_download_files() (in module reacnetgenerator.utils) H HMM (reacnetgenerator.ReacNetGenerator.Status attribute) hmmfilename (reacnetgenerator.ReacNetGenerator attribute) I idx_to_signal() (in module reacnetgenerator.utils_np) INIT (reacnetgenerator.ReacNetGenerator.Status attribute) L listtobytes() (in module reacnetgenerator.utils) listtostirng() (in module reacnetgenerator.utils) M main_parser() (in module reacnetgenerator.commandline) MATRIX (reacnetgenerator.ReacNetGenerator.Status attribute) MISO (reacnetgenerator.ReacNetGenerator.Status attribute) module reacnetgenerator reacnetgenerator.commandline reacnetgenerator.dps reacnetgenerator.reacnetgen reacnetgenerator.tools reacnetgenerator.utils reacnetgenerator.utils_np moleculetemp2filename (reacnetgenerator.ReacNetGenerator attribute) moleculetempfilename (reacnetgenerator.ReacNetGenerator attribute) multiopen() (in module reacnetgenerator.utils) must_be_list() (in module reacnetgenerator.utils) N NETWORK (reacnetgenerator.ReacNetGenerator.Status attribute) newlines (reacnetgenerator.utils.SCOUROPTIONS attribute) O originfilename (reacnetgenerator.ReacNetGenerator attribute) P parm2cmd() (in module reacnetgenerator.commandline) PATH (reacnetgenerator.ReacNetGenerator.Status attribute) produce() (in module reacnetgenerator.utils) R reacnetgenerator module ReacNetGenerator (class in reacnetgenerator) reacnetgenerator.commandline module reacnetgenerator.dps module reacnetgenerator.reacnetgen module ReacNetGenerator.Status (class in reacnetgenerator) reacnetgenerator.tools module reacnetgenerator.utils module reacnetgenerator.utils_np module read_compressed_block() (in module reacnetgenerator.utils) read_reactions() (in module reacnetgenerator.tools) read_species() (in module reacnetgenerator.tools) remove_descriptions (reacnetgenerator.utils.SCOUROPTIONS attribute) remove_descriptive_elements (reacnetgenerator.utils.SCOUROPTIONS attribute) remove_metadata (reacnetgenerator.utils.SCOUROPTIONS attribute) remove_titles (reacnetgenerator.utils.SCOUROPTIONS attribute) REPORT (reacnetgenerator.ReacNetGenerator.Status attribute) report() (reacnetgenerator.ReacNetGenerator method) resultfilename (reacnetgenerator.ReacNetGenerator attribute) returnkeys() (reacnetgenerator.utils.SharedRNGData method) run() (reacnetgenerator.ReacNetGenerator method) run_mp() (in module reacnetgenerator.utils) runanddraw() (reacnetgenerator.ReacNetGenerator method) S SCOUROPTIONS (class in reacnetgenerator.utils) SharedRNGData (class in reacnetgenerator.utils) shorten_ids (reacnetgenerator.utils.SCOUROPTIONS attribute) strip_comments (reacnetgenerator.utils.SCOUROPTIONS attribute) strip_ids (reacnetgenerator.utils.SCOUROPTIONS attribute) strip_xml_prolog (reacnetgenerator.utils.SCOUROPTIONS attribute) strip_xml_space_attribute (reacnetgenerator.utils.SCOUROPTIONS attribute) U urls (reacnetgenerator.ReacNetGenerator attribute) W WriteBuffer (class in reacnetgenerator.utils)
